Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 PPFIA4-201ENST00000272198 5045 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
AP3S2P59780 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
AP3S2P59780 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC12.4□□□□□ -0.43
AP3S2P59780 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
AP3S2P59780 NKAP-201ENST00000371410 5963 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
AP3S2P59780 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
AP3S2P59780 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.43
AP3S2P59780 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.4□□□□□ -0.43
AP3S2P59780 ZFAT-209ENST00000520727 4686 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
AP3S2P59780 MSNP1-201ENST00000511640 1732 ntBASIC12.4□□□□□ -0.43
AP3S2P59780 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.39□□□□□ -0.43
AP3S2P59780 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 AC115284.2-201ENST00000624646 2054 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 SIRPA-204ENST00000622179 4570 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 SLIT2-204ENST00000504154 6390 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 AC073862.5-201ENST00000624129 2027 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 AC004870.1-201ENST00000315132 882 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.39□□□□□ -0.43
AP3S2P59780 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC12.39□□□□□ -0.43
AP3S2P59780 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 KRT18P3-201ENST00000451602 1288 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 RN7SL618P-201ENST00000477850 296 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 RNA5SP419-201ENST00000515908 135 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
AP3S2P59780 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 AC009955.4-201ENST00000597192 544 ntBASIC12.39□□□□□ -0.43
AP3S2P59780 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 DNAH10OS-201ENST00000514254 5040 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 NBPF12-208ENST00000617931 7061 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 WSCD2-201ENST00000332082 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC12.39□□□□□ -0.43
AP3S2P59780 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC12.39□□□□□ -0.43
AP3S2P59780 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
AP3S2P59780 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC12.38□□□□□ -0.43
AP3S2P59780 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
AP3S2P59780 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 KLB-201ENST00000257408 6082 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC12.38□□□□□ -0.43
AP3S2P59780 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC12.38□□□□□ -0.43
AP3S2P59780 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.38□□□□□ -0.43
AP3S2P59780 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.38□□□□□ -0.43
AP3S2P59780 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
AP3S2P59780 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 ZNF41-202ENST00000377065 4531 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
AP3S2P59780 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
AP3S2P59780 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms