Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
CDH4P55283 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
CDH4P55283 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 RPL13AP3-202ENST00000494676 1473 ntBASIC14.64□□□□□ -0.07
CDH4P55283 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 BAX-205ENST00000391871 687 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 OR8T1P-201ENST00000421347 918 ntBASIC14.64□□□□□ -0.07
CDH4P55283 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.64□□□□□ -0.07
CDH4P55283 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CDH4P55283 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 AC106872.11-201ENST00000605838 421 ntBASIC14.64□□□□□ -0.07
CDH4P55283 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CDH4P55283 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CDH4P55283 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CDH4P55283 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 CICP16-201ENST00000502609 2813 ntBASIC14.63□□□□□ -0.07
CDH4P55283 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 OR2K2-202ENST00000374428 1038 ntBASIC14.63□□□□□ -0.07
CDH4P55283 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.63□□□□□ -0.07
CDH4P55283 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.63□□□□□ -0.07
CDH4P55283 DUTP3-201ENST00000450025 415 ntBASIC14.63□□□□□ -0.07
CDH4P55283 RN7SL67P-201ENST00000492147 296 ntBASIC14.63□□□□□ -0.07
CDH4P55283 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.63□□□□□ -0.07
CDH4P55283 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 AC134698.3-201ENST00000523880 214 ntBASIC14.63□□□□□ -0.07
CDH4P55283 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC14.63□□□□□ -0.07
CDH4P55283 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 AC105129.2-201ENST00000559536 390 ntBASIC14.63□□□□□ -0.07
CDH4P55283 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.63□□□□□ -0.07
CDH4P55283 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.63□□□□□ -0.07
CDH4P55283 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CDH4P55283 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CDH4P55283 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms