Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 ENDOV-203ENST00000517795 2548 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HOXA1P49639 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.05□□□□□ -0.48
HOXA1P49639 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
HOXA1P49639 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 SLC35A4-201ENST00000323146 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
HOXA1P49639 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HOXA1P49639 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.05□□□□□ -0.48
HOXA1P49639 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HOXA1P49639 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
HOXA1P49639 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 AL353779.1-201ENST00000434793 351 ntBASIC12.04□□□□□ -0.48
HOXA1P49639 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC12.04□□□□□ -0.48
HOXA1P49639 ZNF890P-202ENST00000530367 1156 ntBASIC12.04□□□□□ -0.48
HOXA1P49639 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 TEX48-202ENST00000612244 662 ntTSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.04□□□□□ -0.48
HOXA1P49639 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 AC079781.4-201ENST00000641908 219 ntBASIC12.04□□□□□ -0.48
HOXA1P49639 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 TMOD1-202ENST00000375175 2516 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
HOXA1P49639 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 LINC00442-202ENST00000456737 2063 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
HOXA1P49639 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HOXA1P49639 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC12.04□□□□□ -0.48
HOXA1P49639 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 AL138799.1-201ENST00000448213 1675 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 AC100757.3-201ENST00000622361 1406 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC12.03□□□□□ -0.48
HOXA1P49639 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.03□□□□□ -0.48
HOXA1P49639 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 DRC7-203ENST00000394337 2906 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 MAPK10-262ENST00000641051 5738 ntBASIC12.03□□□□□ -0.48
HOXA1P49639 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
HOXA1P49639 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms