Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 RNA5SP491-201ENST00000362936 118 ntBASIC14.37□□□□□ -0.11
VCANP13611 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 IGLV2-33-201ENST00000390302 412 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
VCANP13611 MESTP4-201ENST00000412333 1204 ntBASIC14.37□□□□□ -0.11
VCANP13611 BX679664.3-201ENST00000414070 555 ntBASIC14.37□□□□□ -0.11
VCANP13611 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 JPT1-205ENST00000470924 663 ntTSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 AC113935.1-201ENST00000471722 555 ntBASIC14.37□□□□□ -0.11
VCANP13611 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 MIR6741-201ENST00000618782 63 ntBASIC14.37□□□□□ -0.11
VCANP13611 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 AL513477.1-201ENST00000602865 2407 ntBASIC14.37□□□□□ -0.11
VCANP13611 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 AL391903.1-201ENST00000407513 365 ntBASIC14.36□□□□□ -0.11
VCANP13611 APRT-202ENST00000426324 664 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC14.36□□□□□ -0.11
VCANP13611 AP001922.6-201ENST00000532553 546 ntTSL 5 BASIC14.36□□□□□ -0.11
VCANP13611 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VCANP13611 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 LAP3P2-201ENST00000454686 1454 ntBASIC14.36□□□□□ -0.11
VCANP13611 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.36□□□□□ -0.11
VCANP13611 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 AC074019.1-201ENST00000428788 1096 ntBASIC14.36□□□□□ -0.11
VCANP13611 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 RN7SL351P-201ENST00000469306 248 ntBASIC14.36□□□□□ -0.11
VCANP13611 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC14.36□□□□□ -0.11
VCANP13611 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 SEC11A-203ENST00000558134 971 ntTSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC14.36□□□□□ -0.11
VCANP13611 AC106872.9-201ENST00000512437 1393 ntBASIC14.36□□□□□ -0.11
VCANP13611 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
VCANP13611 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 AC090587.1-201ENST00000415809 494 ntTSL 3 BASIC14.36□□□□□ -0.11
VCANP13611 AC145285.1-201ENST00000469929 694 ntBASIC14.36□□□□□ -0.11
VCANP13611 DHRS7-202ENST00000536410 1194 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 RBM4-202ENST00000396053 1337 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC14.36□□□□□ -0.11
VCANP13611 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
VCANP13611 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
VCANP13611 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 AC106881.1-201ENST00000605849 3329 ntBASIC14.35□□□□□ -0.11
VCANP13611 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
VCANP13611 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.35□□□□□ -0.11
VCANP13611 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VCANP13611 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VCANP13611 AC092810.2-201ENST00000431570 362 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms