Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 MST1P2-201ENST00000457982 2291 ntBASIC15.12■□□□□ 0.01
APOEP02649 AL137784.3-201ENST00000623858 2288 ntBASIC15.12■□□□□ 0.01
APOEP02649 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.12■□□□□ 0.01
APOEP02649 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.12■□□□□ 0.01
APOEP02649 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
APOEP02649 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.12■□□□□ 0.01
APOEP02649 AC011742.3-201ENST00000439053 820 ntBASIC15.12■□□□□ 0.01
APOEP02649 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.12■□□□□ 0.01
APOEP02649 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.12■□□□□ 0.01
APOEP02649 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.12■□□□□ 0.01
APOEP02649 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.12■□□□□ 0.01
APOEP02649 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 AC138028.6-201ENST00000616106 1482 ntBASIC15.12■□□□□ 0.01
APOEP02649 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
APOEP02649 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
APOEP02649 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
APOEP02649 FAM90A7P-201ENST00000382628 1395 ntBASIC15.11■□□□□ 0.01
APOEP02649 FAM90A23P-201ENST00000400136 1395 ntBASIC15.11■□□□□ 0.01
APOEP02649 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
APOEP02649 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC15.11■□□□□ 0.01
APOEP02649 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
APOEP02649 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC15.11■□□□□ 0.01
APOEP02649 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
APOEP02649 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
APOEP02649 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.11■□□□□ 0.01
APOEP02649 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.11■□□□□ 0.01
APOEP02649 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.11■□□□□ 0.01
APOEP02649 MARK2P5-201ENST00000507649 634 ntBASIC15.11■□□□□ 0.01
APOEP02649 ZNF767P-206ENST00000513792 565 ntBASIC15.11■□□□□ 0.01
APOEP02649 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 AC103810.3-201ENST00000583567 96 ntBASIC15.11■□□□□ 0.01
APOEP02649 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.11■□□□□ 0.01
APOEP02649 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
APOEP02649 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 TET3-201ENST00000305799 5174 ntTSL 5 BASIC15.11■□□□□ 0.01
APOEP02649 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
APOEP02649 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
APOEP02649 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
APOEP02649 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
APOEP02649 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
APOEP02649 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
APOEP02649 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms