Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
COL3A1P02461 OR2W2P-201ENST00000406313 909 ntBASIC18.52■□□□□ 0.55
COL3A1P02461 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC18.52■□□□□ 0.55
COL3A1P02461 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC18.52■□□□□ 0.55
COL3A1P02461 HNRNPA1P2-207ENST00000432375 960 ntBASIC18.52■□□□□ 0.55
COL3A1P02461 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
COL3A1P02461 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC18.52■□□□□ 0.55
COL3A1P02461 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
COL3A1P02461 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 AC015656.1-201ENST00000624209 3578 ntBASIC18.51■□□□□ 0.55
COL3A1P02461 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL3A1P02461 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC18.51■□□□□ 0.55
COL3A1P02461 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC18.51■□□□□ 0.55
COL3A1P02461 LINP1-201ENST00000417112 917 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 CD44-224ENST00000526669 870 ntTSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 BATF-202ENST00000555504 361 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 MT2A-202ENST00000561491 581 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 MIR3940-201ENST00000579148 102 ntBASIC18.51■□□□□ 0.55
COL3A1P02461 AL356740.1-201ENST00000602192 1297 ntBASIC18.51■□□□□ 0.55
COL3A1P02461 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC18.51■□□□□ 0.55
COL3A1P02461 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC18.51■□□□□ 0.55
COL3A1P02461 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL3A1P02461 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL3A1P02461 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 AC012362.1-201ENST00000434906 739 ntBASIC18.5■□□□□ 0.55
COL3A1P02461 RPS23-207ENST00000511844 530 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 VENTXP3-201ENST00000546480 773 ntBASIC18.5■□□□□ 0.55
COL3A1P02461 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.5■□□□□ 0.55
COL3A1P02461 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC18.5■□□□□ 0.55
COL3A1P02461 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 MIR7845-201ENST00000618396 99 ntBASIC18.5■□□□□ 0.55
COL3A1P02461 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL3A1P02461 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL3A1P02461 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL3A1P02461 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC18.49■□□□□ 0.55
COL3A1P02461 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 FAM90A12P-201ENST00000519497 2375 ntBASIC18.49■□□□□ 0.55
COL3A1P02461 FAM90A24P-201ENST00000520792 2369 ntBASIC18.49■□□□□ 0.55
COL3A1P02461 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
COL3A1P02461 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL3A1P02461 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC18.49■□□□□ 0.55
COL3A1P02461 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.49■□□□□ 0.55
COL3A1P02461 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC18.49■□□□□ 0.55
COL3A1P02461 RN7SL375P-201ENST00000492442 298 ntBASIC18.49■□□□□ 0.55
COL3A1P02461 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.49■□□□□ 0.55
COL3A1P02461 AC132812.1-201ENST00000583145 892 ntBASIC18.49■□□□□ 0.55
COL3A1P02461 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL3A1P02461 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.49■□□□□ 0.55
COL3A1P02461 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms