Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 TMCO5B-205ENST00000530020 894 ntBASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 SNORD3B-1-201ENST00000577988 758 ntBASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 MIR4326-201ENST00000582203 59 ntBASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 HCG18-245ENST00000602550 559 ntTSL 4 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AL031673.1-201ENST00000611460 466 ntBASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AC074138.1-201ENST00000611182 1303 ntBASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
NPC1L1Q9UHC9 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 ABCD1P2-201ENST00000429313 1601 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 RNVU1-8-201ENST00000364272 125 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 RN7SL564P-201ENST00000496309 250 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 MIR3940-201ENST00000579148 102 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 RPL17P45-201ENST00000586289 509 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AP005264.5-201ENST00000590066 467 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AL356740.1-201ENST00000602192 1297 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC007881.3-201ENST00000608897 607 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 FAM90A12P-201ENST00000519497 2375 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 FAM90A24P-201ENST00000520792 2369 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AF013593.1-201ENST00000458074 1487 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 Z98885.3-201ENST00000624882 1757 ntBASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
NPC1L1Q9UHC9 AC089987.1-201ENST00000551654 2209 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 MPV17-204ENST00000399052 749 ntTSL 4 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 FGFR3P1-201ENST00000449999 601 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 AC025186.1-201ENST00000478174 870 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 IGHV1-12-201ENST00000518307 205 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 OR5BD1P-201ENST00000532527 817 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 KRT8P2-201ENST00000556193 944 ntBASIC18.97■□□□□ 0.63
NPC1L1Q9UHC9 AC007952.4-201ENST00000573866 637 ntBASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms