Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AL773545.2-201ENST00000442149 472 ntBASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC010202.1-201ENST00000551181 405 ntBASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC120498.5-201ENST00000561757 299 ntBASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 CCL19-202ENST00000378800 414 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 AC011431.1-201ENST00000512971 230 ntBASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 NF1P11-201ENST00000621292 1282 ntBASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC17.86■□□□□ 0.45
SHANK3Q9BYB0 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 BX640514.1-201ENST00000583223 1918 ntBASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 DNM1P46-202ENST00000415963 882 ntBASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 HNRNPA3P12-201ENST00000437410 1063 ntBASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 MARK2P17-201ENST00000498560 841 ntBASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC17.85■□□□□ 0.45
SHANK3Q9BYB0 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 HDGF-202ENST00000368206 960 ntTSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 RPS5-205ENST00000598495 800 ntTSL 3 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SHANK3Q9BYB0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms