Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ACY3-202ENST00000529256 933 ntTSL 3 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC123912.6-201ENST00000612657 315 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC106782.5-201ENST00000616011 337 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC126755.5-201ENST00000622756 267 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 DBET-201ENST00000630918 3363 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC103563.1-201ENST00000429316 123 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 VENTXP4-201ENST00000449029 958 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AL136084.1-201ENST00000449172 318 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC099328.1-201ENST00000498809 1030 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 AC026336.4-201ENST00000624565 1050 ntBASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CCDC88AQ3V6T2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 FAM45BP-202ENST00000592932 1624 ntBASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AC053503.3-201ENST00000448375 114 ntBASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CCDC88AQ3V6T2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC092910.2-201ENST00000491262 348 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 AC006986.1-201ENST00000612764 241 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC88AQ3V6T2 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms