Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.74■□□□□ 0.27
BRCA1P38398 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 CLK2P1-201ENST00000416636 1294 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 AC069421.1-201ENST00000447462 323 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 AC005011.1-201ENST00000455206 210 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 RN7SL76P-201ENST00000482435 289 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC16.74■□□□□ 0.27
BRCA1P38398 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 AC148476.1-201ENST00000622182 705 ntBASIC16.74■□□□□ 0.27
BRCA1P38398 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC16.74■□□□□ 0.27
BRCA1P38398 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.74■□□□□ 0.27
BRCA1P38398 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 RN7SL363P-201ENST00000482412 273 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 RN7SL47P-201ENST00000488710 299 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.73■□□□□ 0.27
BRCA1P38398 AC092535.4-201ENST00000609548 397 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.73■□□□□ 0.27
BRCA1P38398 AC015813.5-201ENST00000624641 1514 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 AC026271.1-201ENST00000447794 1348 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC16.73■□□□□ 0.27
BRCA1P38398 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 SPTLC1P3-201ENST00000403408 259 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 AC007279.1-201ENST00000448547 837 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.73■□□□□ 0.27
BRCA1P38398 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
BRCA1P38398 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC16.73■□□□□ 0.27
BRCA1P38398 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 TP73-207ENST00000378290 1831 ntTSL 2 BASIC16.73■□□□□ 0.27
BRCA1P38398 FMO6P-201ENST00000236166 1620 ntBASIC16.73■□□□□ 0.27
BRCA1P38398 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
BRCA1P38398 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BRCA1P38398 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 NOS2P3-201ENST00000411468 867 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 NOS2P2-201ENST00000426269 867 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 ACTG1P23-201ENST00000437653 1074 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC16.72■□□□□ 0.27
BRCA1P38398 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC16.72■□□□□ 0.27
BRCA1P38398 JPT1-205ENST00000470924 663 ntTSL 5 BASIC16.72■□□□□ 0.27
BRCA1P38398 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC16.72■□□□□ 0.27
BRCA1P38398 AC104212.2-201ENST00000478813 628 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 RN7SL638P-201ENST00000494527 290 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC16.72■□□□□ 0.27
BRCA1P38398 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC16.72■□□□□ 0.27
BRCA1P38398 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC16.72■□□□□ 0.27
BRCA1P38398 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 AL109954.3-201ENST00000615088 558 ntBASIC16.72■□□□□ 0.27
BRCA1P38398 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
BRCA1P38398 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
BRCA1P38398 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
BRCA1P38398 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
BRCA1P38398 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
BRCA1P38398 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms