Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 AC100827.2-201ENST00000563214 1194 ntBASIC12.37□□□□□ -0.43
CCL1P22362 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.37□□□□□ -0.43
CCL1P22362 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CCL1P22362 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.37□□□□□ -0.43
CCL1P22362 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
CCL1P22362 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CCL1P22362 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 F2-205ENST00000530231 1849 ntTSL 5 BASIC12.37□□□□□ -0.43
CCL1P22362 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CCL1P22362 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 SALL4P6-201ENST00000429385 1691 ntBASIC12.36□□□□□ -0.43
CCL1P22362 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
CCL1P22362 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 OR2R1P-201ENST00000441404 914 ntBASIC12.36□□□□□ -0.43
CCL1P22362 CROCCP4-201ENST00000457096 498 ntBASIC12.36□□□□□ -0.43
CCL1P22362 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 USB1-203ENST00000539737 1212 ntTSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.36□□□□□ -0.43
CCL1P22362 AC005962.1-201ENST00000584100 773 ntBASIC12.36□□□□□ -0.43
CCL1P22362 AL359183.1-201ENST00000623796 2132 ntBASIC12.36□□□□□ -0.43
CCL1P22362 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 DDC-214ENST00000622873 1839 ntTSL 3 BASIC12.36□□□□□ -0.43
CCL1P22362 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 AC114271.1-201ENST00000612689 2813 ntBASIC12.36□□□□□ -0.43
CCL1P22362 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.36□□□□□ -0.43
CCL1P22362 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CCL1P22362 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CCL1P22362 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CCL1P22362 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CCL1P22362 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.35□□□□□ -0.43
CCL1P22362 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CCL1P22362 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CCL1P22362 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CCL1P22362 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.35□□□□□ -0.43
CCL1P22362 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
CCL1P22362 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms