Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PCNAP12004 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.13□□□□□ -0.15
PCNAP12004 AL590440.2-201ENST00000641973 1595 ntBASIC14.13□□□□□ -0.15
PCNAP12004 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
PCNAP12004 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
PCNAP12004 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 AL136309.1-201ENST00000403917 691 ntBASIC14.13□□□□□ -0.15
PCNAP12004 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.13□□□□□ -0.15
PCNAP12004 AC005034.1-201ENST00000426657 489 ntBASIC14.13□□□□□ -0.15
PCNAP12004 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.13□□□□□ -0.15
PCNAP12004 RPL7P3-201ENST00000441388 714 ntBASIC14.13□□□□□ -0.15
PCNAP12004 GAPDHP21-201ENST00000450301 1010 ntBASIC14.13□□□□□ -0.15
PCNAP12004 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 CTBP2P5-201ENST00000454986 1264 ntBASIC14.13□□□□□ -0.15
PCNAP12004 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 RAB43P1-201ENST00000561790 589 ntBASIC14.13□□□□□ -0.15
PCNAP12004 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.13□□□□□ -0.15
PCNAP12004 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC14.13□□□□□ -0.15
PCNAP12004 ZACNP1-201ENST00000612259 710 ntBASIC14.13□□□□□ -0.15
PCNAP12004 AL136301.1-201ENST00000615830 422 ntBASIC14.13□□□□□ -0.15
PCNAP12004 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.13□□□□□ -0.15
PCNAP12004 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.13□□□□□ -0.15
PCNAP12004 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.13□□□□□ -0.15
PCNAP12004 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.13□□□□□ -0.15
PCNAP12004 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PCNAP12004 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 AC004899.2-201ENST00000622993 3860 ntBASIC14.12□□□□□ -0.15
PCNAP12004 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.12□□□□□ -0.15
PCNAP12004 BOLA2P3-201ENST00000404566 256 ntBASIC14.12□□□□□ -0.15
PCNAP12004 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.12□□□□□ -0.15
PCNAP12004 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.12□□□□□ -0.15
PCNAP12004 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.12□□□□□ -0.15
PCNAP12004 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.12□□□□□ -0.15
PCNAP12004 SORD2P-201ENST00000558556 1069 ntBASIC14.12□□□□□ -0.15
PCNAP12004 AP006547.1-201ENST00000563435 692 ntBASIC14.12□□□□□ -0.15
PCNAP12004 AL358472.3-201ENST00000608147 415 ntBASIC14.12□□□□□ -0.15
PCNAP12004 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
PCNAP12004 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.12□□□□□ -0.15
PCNAP12004 CICP16-201ENST00000502609 2813 ntBASIC14.12□□□□□ -0.15
PCNAP12004 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.12□□□□□ -0.15
PCNAP12004 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PCNAP12004 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms