Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SLC25A25-204ENST00000373069 3376 ntTSL 5 BASIC11.2□□□□□ -0.62
CXCL1P09341 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 IL1RAP-211ENST00000439062 2244 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 FZD7-201ENST00000286201 3859 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
CXCL1P09341 PCDHB4-201ENST00000194152 3825 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
CXCL1P09341 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 LINC00442-202ENST00000456737 2063 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 GPD1-201ENST00000301149 3082 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
CXCL1P09341 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
CXCL1P09341 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 KCNH1-202ENST00000367007 3445 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 SHROOM2P1-201ENST00000434773 2384 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC11.19□□□□□ -0.62
CXCL1P09341 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 AKAP8-201ENST00000269701 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
CXCL1P09341 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 CEACAM20-203ENST00000614924 1809 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 MKL1-205ENST00000407029 4091 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 KRT8P35-201ENST00000483942 1338 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 AL360270.3-201ENST00000609118 1348 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 NAPB-207ENST00000617876 3883 ntAPPRIS ALT1 TSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC11.19□□□□□ -0.62
CXCL1P09341 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 AC004066.1-201ENST00000502488 802 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 GATD1-206ENST00000526325 756 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
CXCL1P09341 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC11.19□□□□□ -0.62
CXCL1P09341 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 C20orf181-201ENST00000623918 480 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
CXCL1P09341 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 AC005696.4-201ENST00000614400 3147 ntBASIC11.19□□□□□ -0.62
CXCL1P09341 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 VAT1L-201ENST00000302536 3825 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC11.19□□□□□ -0.62
CXCL1P09341 FBXO44-202ENST00000251547 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
CXCL1P09341 POPDC2-208ENST00000493094 1837 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
CXCL1P09341 CU639417.6-202ENST00000624872 3241 ntTSL 5 BASIC11.18□□□□□ -0.62
CXCL1P09341 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 TSKU-203ENST00000527881 3554 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC11.18□□□□□ -0.62
CXCL1P09341 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 MGAT4EP-201ENST00000330493 2810 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 CTRC-201ENST00000375943 3147 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 TMPRSS7-201ENST00000419127 2317 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 KCNJ14-202ENST00000391884 3990 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 IL9RP2-201ENST00000423948 1312 ntBASIC11.18□□□□□ -0.62
CXCL1P09341 ARL13B-210ENST00000535334 3906 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 LITAF-203ENST00000413364 2292 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 GRK7-201ENST00000264952 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 KDM6A-214ENST00000621147 2876 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms