Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 AC253536.4-201ENST00000440539 267 ntBASIC18.54■□□□□ 0.56
COL3A1P02461 AC004837.1-201ENST00000446267 564 ntBASIC18.54■□□□□ 0.56
COL3A1P02461 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
COL3A1P02461 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.54■□□□□ 0.56
COL3A1P02461 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.54■□□□□ 0.56
COL3A1P02461 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
COL3A1P02461 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
COL3A1P02461 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL3A1P02461 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC18.54■□□□□ 0.56
COL3A1P02461 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 Z98885.3-201ENST00000624882 1757 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 AC106827.1-201ENST00000366454 431 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 Z69890.1-201ENST00000382990 339 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 AC007279.1-201ENST00000448547 837 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC18.53■□□□□ 0.56
COL3A1P02461 HINT1-205ENST00000508488 703 ntTSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 AC093300.1-201ENST00000510368 1201 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.53■□□□□ 0.56
COL3A1P02461 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 COX5A-205ENST00000568517 582 ntTSL 3 BASIC18.53■□□□□ 0.56
COL3A1P02461 AL118522.1-201ENST00000611368 560 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 ST5-261ENST00000626808 1071 ntTSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL3A1P02461 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
COL3A1P02461 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 MARK2P9-201ENST00000430958 1727 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 AC245140.2-201ENST00000624054 1939 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 CROT-203ENST00000419147 2959 ntTSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 SNX18-202ENST00000343017 3140 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL3A1P02461 AC072061.1-201ENST00000569710 2234 ntBASIC18.53■□□□□ 0.56
COL3A1P02461 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC18.53■□□□□ 0.56
COL3A1P02461 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
COL3A1P02461 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
COL3A1P02461 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
COL3A1P02461 AC092638.2-201ENST00000441105 947 ntBASIC18.52■□□□□ 0.56
COL3A1P02461 AL359091.4-201ENST00000610052 409 ntBASIC18.52■□□□□ 0.56
COL3A1P02461 AP001065.2-201ENST00000617205 644 ntBASIC18.52■□□□□ 0.56
COL3A1P02461 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
COL3A1P02461 RCC2P5-201ENST00000492126 1487 ntBASIC18.52■□□□□ 0.56
COL3A1P02461 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC18.52■□□□□ 0.56
COL3A1P02461 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
COL3A1P02461 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
COL3A1P02461 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
COL3A1P02461 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC18.52■□□□□ 0.56
COL3A1P02461 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL3A1P02461 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
COL3A1P02461 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL3A1P02461 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
COL3A1P02461 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms