Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 RPL8P2-201ENST00000430538 502 ntBASIC14.41□□□□□ -0.1
LHX3Q9UBR4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 AL157996.1-201ENST00000624684 2299 ntBASIC14.41□□□□□ -0.1
LHX3Q9UBR4 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LHX3Q9UBR4 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 RPL13AP3-202ENST00000494676 1473 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 MIR557-201ENST00000385239 98 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AC073869.2-201ENST00000417338 1026 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 RN7SL769P-201ENST00000469386 295 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AC114947.1-202ENST00000514136 344 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AL513477.1-201ENST00000602865 2407 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 AL928921.2-201ENST00000641325 2442 ntBASIC14.4□□□□□ -0.1
LHX3Q9UBR4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LHX3Q9UBR4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms