Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AC093752.3-201ENST00000567343 901 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PEBP1P2-201ENST00000603980 558 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 MEG3_2.1-201ENST00000611456 105 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AC002472.3-201ENST00000640124 621 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 HLA-K-203ENST00000430151 1046 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 CR383656.3-201ENST00000551315 183 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 RN7SL470P-201ENST00000583069 259 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AC004466.1-201ENST00000599515 1080 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 PTPN20CP-201ENST00000614090 920 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 FAM90A7P-201ENST00000382628 1395 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 FAM90A23P-201ENST00000400136 1395 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 AC055811.4-201ENST00000624039 1754 ntBASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
COL28A1Q2UY09 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AL008718.2-201ENST00000609206 1313 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms