Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.93□□□□□ -0.02
COL4A4P53420 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 AL050341.2-201ENST00000567508 1541 ntBASIC14.92□□□□□ -0.02
COL4A4P53420 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC14.92□□□□□ -0.02
COL4A4P53420 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.92□□□□□ -0.02
COL4A4P53420 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC14.92□□□□□ -0.02
COL4A4P53420 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC14.92□□□□□ -0.02
COL4A4P53420 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC14.92□□□□□ -0.02
COL4A4P53420 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL4A4P53420 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
COL4A4P53420 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.92□□□□□ -0.02
COL4A4P53420 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 AC103592.1-201ENST00000394513 664 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL4A4P53420 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC14.91□□□□□ -0.02
COL4A4P53420 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.91□□□□□ -0.02
COL4A4P53420 AC004801.1-201ENST00000549557 360 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 MIR4265-201ENST00000582152 99 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 KF455155.1-201ENST00000604493 303 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 MIR6893-201ENST00000613458 69 ntBASIC14.91□□□□□ -0.02
COL4A4P53420 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
COL4A4P53420 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL4A4P53420 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC14.91□□□□□ -0.02
COL4A4P53420 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL4A4P53420 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.9□□□□□ -0.02
COL4A4P53420 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.9□□□□□ -0.02
COL4A4P53420 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
COL4A4P53420 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 U73169.1-201ENST00000395152 367 ntBASIC14.9□□□□□ -0.02
COL4A4P53420 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC14.9□□□□□ -0.02
COL4A4P53420 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 KRT18P15-201ENST00000458108 1291 ntBASIC14.9□□□□□ -0.02
COL4A4P53420 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC14.9□□□□□ -0.02
COL4A4P53420 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC14.9□□□□□ -0.02
COL4A4P53420 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC14.9□□□□□ -0.02
COL4A4P53420 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.9□□□□□ -0.02
COL4A4P53420 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC14.9□□□□□ -0.02
COL4A4P53420 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL4A4P53420 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL4A4P53420 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms