Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CIITAP33076 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CIITAP33076 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CIITAP33076 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.12■□□□□ 0.17
CIITAP33076 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.12■□□□□ 0.17
CIITAP33076 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.12■□□□□ 0.17
CIITAP33076 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.12■□□□□ 0.17
CIITAP33076 CHCHD2P2-201ENST00000503744 321 ntBASIC16.12■□□□□ 0.17
CIITAP33076 GOLGA2P8-201ENST00000505201 779 ntBASIC16.12■□□□□ 0.17
CIITAP33076 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
CIITAP33076 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.12■□□□□ 0.17
CIITAP33076 MIR3907-201ENST00000579424 151 ntBASIC16.12■□□□□ 0.17
CIITAP33076 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 SIGLEC18P-201ENST00000602271 909 ntBASIC16.12■□□□□ 0.17
CIITAP33076 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 AC067931.2-201ENST00000623655 2003 ntBASIC16.12■□□□□ 0.17
CIITAP33076 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CIITAP33076 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.12■□□□□ 0.17
CIITAP33076 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CIITAP33076 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 AL009178.2-201ENST00000597278 2719 ntBASIC16.11■□□□□ 0.17
CIITAP33076 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CIITAP33076 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CIITAP33076 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 BX679664.3-201ENST00000414070 555 ntBASIC16.11■□□□□ 0.17
CIITAP33076 AP000358.1-201ENST00000456260 156 ntBASIC16.11■□□□□ 0.17
CIITAP33076 AC113935.1-201ENST00000471722 555 ntBASIC16.11■□□□□ 0.17
CIITAP33076 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CIITAP33076 ALG1L13P-202ENST00000519320 584 ntBASIC16.11■□□□□ 0.17
CIITAP33076 RHOQP1-201ENST00000555758 579 ntBASIC16.11■□□□□ 0.17
CIITAP33076 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.11■□□□□ 0.17
CIITAP33076 NDUFB10P1-201ENST00000567319 521 ntBASIC16.11■□□□□ 0.17
CIITAP33076 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.11■□□□□ 0.17
CIITAP33076 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CIITAP33076 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms