Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC233724.13-201ENST00000598383 410 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 AL512343.1-201ENST00000605837 169 ntBASIC11.07□□□□□ -0.64
HLA-DMBP28068 ETV2-208ENST00000621247 941 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC11.07□□□□□ -0.64
HLA-DMBP28068 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
HLA-DMBP28068 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TPM3P8-201ENST00000330554 643 ntBASIC11.06□□□□□ -0.64
HLA-DMBP28068 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 BOLA2P3-201ENST00000404566 256 ntBASIC11.06□□□□□ -0.64
HLA-DMBP28068 MIR1909-201ENST00000411312 80 ntBASIC11.06□□□□□ -0.64
HLA-DMBP28068 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 RPL28-204ENST00000431533 590 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 PUDPP3-201ENST00000445368 636 ntBASIC11.06□□□□□ -0.64
HLA-DMBP28068 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 AL022328.1-201ENST00000610050 478 ntBASIC11.06□□□□□ -0.64
HLA-DMBP28068 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms