Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 KRT8P21-201ENST00000430398 1491 ntBASIC12.3□□□□□ -0.44
USF1P22415 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 AC026316.1-201ENST00000398900 414 ntBASIC12.3□□□□□ -0.44
USF1P22415 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC12.3□□□□□ -0.44
USF1P22415 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.3□□□□□ -0.44
USF1P22415 AC073150.1-201ENST00000450406 1084 ntBASIC12.3□□□□□ -0.44
USF1P22415 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC12.3□□□□□ -0.44
USF1P22415 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.3□□□□□ -0.44
USF1P22415 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.3□□□□□ -0.44
USF1P22415 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
USF1P22415 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
USF1P22415 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.3□□□□□ -0.44
USF1P22415 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
USF1P22415 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.3□□□□□ -0.44
USF1P22415 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC12.29□□□□□ -0.44
USF1P22415 RPL17P11-201ENST00000417593 544 ntBASIC12.29□□□□□ -0.44
USF1P22415 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 FGFR3P1-201ENST00000449999 601 ntBASIC12.29□□□□□ -0.44
USF1P22415 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.29□□□□□ -0.44
USF1P22415 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC12.29□□□□□ -0.44
USF1P22415 IQSEC3P1-201ENST00000538799 536 ntBASIC12.29□□□□□ -0.44
USF1P22415 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC12.29□□□□□ -0.44
USF1P22415 MIR3147-201ENST00000577811 66 ntBASIC12.29□□□□□ -0.44
USF1P22415 BX088702.1-201ENST00000610784 235 ntBASIC12.29□□□□□ -0.44
USF1P22415 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
USF1P22415 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 AC136759.1-202ENST00000530858 2194 ntBASIC12.29□□□□□ -0.44
USF1P22415 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USF1P22415 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
USF1P22415 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC12.29□□□□□ -0.44
USF1P22415 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms