Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 RCC2P5-201ENST00000492126 1487 ntBASIC17.93■□□□□ 0.46
SCN11AQ9UI33 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 IFNWP2-201ENST00000431203 580 ntBASIC17.93■□□□□ 0.46
SCN11AQ9UI33 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 AC113385.2-201ENST00000614465 762 ntBASIC17.93■□□□□ 0.46
SCN11AQ9UI33 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 AL513477.1-201ENST00000602865 2407 ntBASIC17.93■□□□□ 0.46
SCN11AQ9UI33 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SCN11AQ9UI33 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 COCH-203ENST00000460581 2688 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 SNU13-204ENST00000402458 462 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 AC092810.2-201ENST00000431570 362 ntBASIC17.92■□□□□ 0.46
SCN11AQ9UI33 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 AC073869.4-201ENST00000620841 800 ntBASIC17.92■□□□□ 0.46
SCN11AQ9UI33 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.92■□□□□ 0.46
SCN11AQ9UI33 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 AC152010.1-201ENST00000415779 2006 ntBASIC17.92■□□□□ 0.46
SCN11AQ9UI33 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 KRT8P42-201ENST00000405771 1399 ntBASIC17.92■□□□□ 0.46
SCN11AQ9UI33 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.92■□□□□ 0.46
SCN11AQ9UI33 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC005077.3-201ENST00000449614 213 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AL356740.1-201ENST00000602192 1297 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 SIRPB3P-201ENST00000340424 1216 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC136604.1-202ENST00000425471 771 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 RPS18P9-201ENST00000482817 460 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC112250.1-201ENST00000504640 745 ntBASIC17.91■□□□□ 0.46
SCN11AQ9UI33 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN11AQ9UI33 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms