Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC097359.2-201ENST00000604992 2389 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC078875.1-201ENST00000431907 724 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 CALR4P-201ENST00000431943 946 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC003686.1-201ENST00000550956 1034 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 NDUFV2P1-201ENST00000596415 907 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AL645939.5-201ENST00000606834 243 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AC026740.1-201ENST00000607068 791 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 AHCYP4-201ENST00000419201 1315 ntBASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
TRIM39Q9HCM9 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 RN7SKP214-201ENST00000364208 315 ntBASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AL161932.2-201ENST00000435436 679 ntBASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 XBP1P1-201ENST00000436573 652 ntBASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC124068.2-201ENST00000569473 1109 ntBASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 DRG2-220ENST00000583355 891 ntTSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 AL805961.1-203ENST00000641078 1258 ntBASIC14.36□□□□□ -0.11
TRIM39Q9HCM9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms