Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ADM-202ENST00000524948 584 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 MIR5189-201ENST00000577370 114 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ABBA01031660.1-201ENST00000635219 756 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 SCARB2-215ENST00000639145 4471 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AC138028.6-201ENST00000616106 1482 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AC023090.2-201ENST00000625182 2110 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ACTG1P3-201ENST00000431775 1114 ntBASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AL157414.3-201ENST00000624276 1954 ntBASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 AC011474.4-201ENST00000623523 2076 ntBASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
PDLIM3Q53GG5 KRT8P22-201ENST00000562317 1415 ntBASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.11□□□□□ -0.47
PDLIM3Q53GG5 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms