Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.45□□□□□ -0.26
COL5A1P20908 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 IFNWP2-201ENST00000431203 580 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC13.45□□□□□ -0.26
COL5A1P20908 GULOP-201ENST00000454030 748 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC13.45□□□□□ -0.26
COL5A1P20908 TBC1D3P6-201ENST00000505954 962 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC13.45□□□□□ -0.26
COL5A1P20908 AC004686.1-201ENST00000605113 538 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 AC113385.2-201ENST00000614465 762 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 AC005912.2-201ENST00000619492 2400 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.45□□□□□ -0.26
COL5A1P20908 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 AL590824.1-201ENST00000403828 1349 ntBASIC13.45□□□□□ -0.26
COL5A1P20908 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL5A1P20908 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC13.45□□□□□ -0.26
COL5A1P20908 AC068760.1-201ENST00000493579 1953 ntBASIC13.44□□□□□ -0.26
COL5A1P20908 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 AC136604.1-202ENST00000425471 771 ntBASIC13.44□□□□□ -0.26
COL5A1P20908 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC13.44□□□□□ -0.26
COL5A1P20908 VDAC1P11-201ENST00000458323 852 ntBASIC13.44□□□□□ -0.26
COL5A1P20908 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC13.44□□□□□ -0.26
COL5A1P20908 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.44□□□□□ -0.26
COL5A1P20908 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 HR-201ENST00000312841 5351 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 PES1P2-201ENST00000449745 1735 ntBASIC13.44□□□□□ -0.26
COL5A1P20908 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.26
COL5A1P20908 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.44□□□□□ -0.26
COL5A1P20908 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL5A1P20908 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL5A1P20908 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.43□□□□□ -0.26
COL5A1P20908 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.43□□□□□ -0.26
COL5A1P20908 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL5A1P20908 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL5A1P20908 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms