Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC108734.2-201ENST00000420887 1069 ntBASIC18.59■□□□□ 0.57
COL3A1P02461 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC18.59■□□□□ 0.57
COL3A1P02461 RPL7P35-201ENST00000446943 740 ntBASIC18.59■□□□□ 0.57
COL3A1P02461 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.59■□□□□ 0.57
COL3A1P02461 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC18.59■□□□□ 0.57
COL3A1P02461 OR2A1-AS1-210ENST00000496968 531 ntBASIC18.59■□□□□ 0.57
COL3A1P02461 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.59■□□□□ 0.57
COL3A1P02461 MIR4326-201ENST00000582203 59 ntBASIC18.59■□□□□ 0.57
COL3A1P02461 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC18.59■□□□□ 0.57
COL3A1P02461 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC18.59■□□□□ 0.57
COL3A1P02461 NAMA-206ENST00000605377 509 ntTSL 5 BASIC18.59■□□□□ 0.57
COL3A1P02461 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL3A1P02461 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC18.59■□□□□ 0.57
COL3A1P02461 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 AC018463.1-201ENST00000456674 917 ntBASIC18.58■□□□□ 0.57
COL3A1P02461 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC18.58■□□□□ 0.57
COL3A1P02461 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC18.58■□□□□ 0.57
COL3A1P02461 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.58■□□□□ 0.57
COL3A1P02461 GAS7-216ENST00000583882 553 ntTSL 5 BASIC18.58■□□□□ 0.57
COL3A1P02461 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
COL3A1P02461 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC18.58■□□□□ 0.57
COL3A1P02461 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
COL3A1P02461 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL3A1P02461 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL3A1P02461 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL3A1P02461 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL3A1P02461 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL3A1P02461 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
COL3A1P02461 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC18.58■□□□□ 0.56
COL3A1P02461 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.58■□□□□ 0.56
COL3A1P02461 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC18.58■□□□□ 0.56
COL3A1P02461 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.58■□□□□ 0.56
COL3A1P02461 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC18.58■□□□□ 0.56
COL3A1P02461 PPIA-208ENST00000489459 907 ntTSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC18.58■□□□□ 0.56
COL3A1P02461 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 KRT18P8-201ENST00000581937 1246 ntBASIC18.58■□□□□ 0.56
COL3A1P02461 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 AL009176.1-201ENST00000607876 650 ntBASIC18.58■□□□□ 0.56
COL3A1P02461 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 PPIA-210ENST00000620047 827 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC18.58■□□□□ 0.56
COL3A1P02461 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL3A1P02461 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.56
COL3A1P02461 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.57■□□□□ 0.56
COL3A1P02461 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC18.57■□□□□ 0.56
COL3A1P02461 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
COL3A1P02461 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL3A1P02461 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms