Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
SIX3O95343 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
SIX3O95343 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.15□□□□□ -0.15
SIX3O95343 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.15
SIX3O95343 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 AC131212.3-201ENST00000624087 4219 ntBASIC14.14□□□□□ -0.15
SIX3O95343 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
SIX3O95343 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.14□□□□□ -0.15
SIX3O95343 COX5BP8-201ENST00000416911 349 ntBASIC14.14□□□□□ -0.15
SIX3O95343 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 CROCCP4-201ENST00000457096 498 ntBASIC14.14□□□□□ -0.15
SIX3O95343 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.14□□□□□ -0.15
SIX3O95343 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.14□□□□□ -0.15
SIX3O95343 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.14□□□□□ -0.15
SIX3O95343 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
SIX3O95343 AHCYP2-201ENST00000430630 1300 ntBASIC14.14□□□□□ -0.15
SIX3O95343 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
SIX3O95343 PPT1-213ENST00000641319 2388 ntBASIC14.14□□□□□ -0.15
SIX3O95343 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 AC005252.3-201ENST00000623855 2258 ntBASIC14.13□□□□□ -0.15
SIX3O95343 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.13□□□□□ -0.15
SIX3O95343 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.13□□□□□ -0.15
SIX3O95343 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.13□□□□□ -0.15
SIX3O95343 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
SIX3O95343 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 USP17L6P-201ENST00000382470 1197 ntBASIC14.13□□□□□ -0.15
SIX3O95343 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 CNN2P10-201ENST00000443067 918 ntBASIC14.13□□□□□ -0.15
SIX3O95343 AL355994.2-201ENST00000447882 704 ntBASIC14.13□□□□□ -0.15
SIX3O95343 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.13□□□□□ -0.15
SIX3O95343 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.13□□□□□ -0.15
SIX3O95343 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.13□□□□□ -0.15
SIX3O95343 AP006547.1-201ENST00000563435 692 ntBASIC14.13□□□□□ -0.15
SIX3O95343 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.13□□□□□ -0.15
SIX3O95343 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
SIX3O95343 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 BAP1-211ENST00000615113 489 ntBASIC14.13□□□□□ -0.15
SIX3O95343 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.13□□□□□ -0.15
SIX3O95343 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SIX3O95343 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms