Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-2O95096 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-2O95096 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-2O95096 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AC005740.2-201ENST00000511085 419 ntBASIC13.29□□□□□ -0.28
NKX2-2O95096 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC13.29□□□□□ -0.28
NKX2-2O95096 AL008638.5-201ENST00000623814 1298 ntBASIC13.29□□□□□ -0.28
NKX2-2O95096 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
NKX2-2O95096 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC13.29□□□□□ -0.28
NKX2-2O95096 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
NKX2-2O95096 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
NKX2-2O95096 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
NKX2-2O95096 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX2-2O95096 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 BRWD1P1-201ENST00000401091 371 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 HMGA1P1-201ENST00000415560 1062 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 AC104306.2-201ENST00000451877 341 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.28□□□□□ -0.28
NKX2-2O95096 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.28□□□□□ -0.28
NKX2-2O95096 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
NKX2-2O95096 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 AC013355.1-201ENST00000562625 723 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.28□□□□□ -0.28
NKX2-2O95096 MIR6752-201ENST00000618442 71 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 SHMT1P1-201ENST00000419974 1312 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
NKX2-2O95096 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.28□□□□□ -0.28
NKX2-2O95096 AGAP10P-201ENST00000454844 2418 ntBASIC13.28□□□□□ -0.28
NKX2-2O95096 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.28□□□□□ -0.28
NKX2-2O95096 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
NKX2-2O95096 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.27□□□□□ -0.28
NKX2-2O95096 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.27□□□□□ -0.28
NKX2-2O95096 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
NKX2-2O95096 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.27□□□□□ -0.28
NKX2-2O95096 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms