Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC026320.2-201ENST00000434379 478 ntBASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 RPSAP15-201ENST00000448168 861 ntBASIC14.45□□□□□ -0.1
LHX3Q9UBR4 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.45□□□□□ -0.1
LHX3Q9UBR4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC079336.7-201ENST00000623428 1078 ntBASIC14.45□□□□□ -0.1
LHX3Q9UBR4 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 AC117489.1-201ENST00000625169 3217 ntBASIC14.45□□□□□ -0.1
LHX3Q9UBR4 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LHX3Q9UBR4 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 SHMT1P1-201ENST00000419974 1312 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AC105129.2-201ENST00000559536 390 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 ELP5-212ENST00000574255 671 ntTSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MIR3677-201ENST00000578964 60 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 AC012044.1-201ENST00000603431 297 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 BAP1-211ENST00000615113 489 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.44□□□□□ -0.1
LHX3Q9UBR4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LHX3Q9UBR4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LHX3Q9UBR4 KRT8P31-201ENST00000504812 1408 ntBASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms