Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 PDIA3P1-201ENST00000471856 1510 ntBASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
UPF3BQ9BZI7 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC010141.1-201ENST00000411585 623 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 HIST2H2BB-201ENST00000449108 381 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AP006547.1-201ENST00000563435 692 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC005586.2-201ENST00000563946 837 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC104506.1-201ENST00000609247 429 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ZACNP1-201ENST00000612259 710 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 SRC-202ENST00000373558 4304 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 TMBIM7P-202ENST00000641474 1516 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC005014.1-201ENST00000432006 2976 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 SHC1P1-201ENST00000425230 1745 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 E2F3P2-201ENST00000447755 1422 ntBASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC17.29■□□□□ 0.36
UPF3BQ9BZI7 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC072061.1-201ENST00000569710 2234 ntBASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AHCYP2-201ENST00000430630 1300 ntBASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 MIR326-201ENST00000362220 95 ntBASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms