Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 ZBTB12BP-201ENST00000314232 1122 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MIR33B-201ENST00000385104 96 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 BCRP2-202ENST00000447763 634 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC005077.2-201ENST00000449786 690 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RN7SL818P-201ENST00000485099 259 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 BCRP6-201ENST00000510112 632 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 BCRP7-201ENST00000511549 544 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SCARNA20.5-201ENST00000516991 142 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TDH-203ENST00000531764 1110 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AP000812.2-201ENST00000538934 718 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MIR4750-201ENST00000584564 56 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RN7SL725P-201ENST00000606439 259 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 HLA-C-210ENST00000640219 976 ntBASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
PDLIM3Q53GG5 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 TP73-203ENST00000357733 4899 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 HLA-K-203ENST00000430151 1046 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AL162726.2-201ENST00000438986 1017 ntBASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC12.13□□□□□ -0.47
PDLIM3Q53GG5 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms