Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.4□□□□□ -0.26
RNF4P78317 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.4□□□□□ -0.26
RNF4P78317 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.4□□□□□ -0.26
RNF4P78317 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.4□□□□□ -0.26
RNF4P78317 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 AC067750.1-201ENST00000608826 6545 ntBASIC13.4□□□□□ -0.26
RNF4P78317 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.27
RNF4P78317 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.27
RNF4P78317 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.4□□□□□ -0.27
RNF4P78317 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 ACTG1P2-201ENST00000415776 1125 ntBASIC13.39□□□□□ -0.27
RNF4P78317 ACTG1P11-201ENST00000425411 1125 ntBASIC13.39□□□□□ -0.27
RNF4P78317 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.39□□□□□ -0.27
RNF4P78317 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 AC090857.1-201ENST00000527400 390 ntBASIC13.39□□□□□ -0.27
RNF4P78317 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.39□□□□□ -0.27
RNF4P78317 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 AC244517.3-201ENST00000616254 1235 ntBASIC13.39□□□□□ -0.27
RNF4P78317 AC090386.2-201ENST00000623010 1039 ntBASIC13.39□□□□□ -0.27
RNF4P78317 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.39□□□□□ -0.27
RNF4P78317 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RNF4P78317 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.39□□□□□ -0.27
RNF4P78317 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.39□□□□□ -0.27
RNF4P78317 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 AC139749.1-202ENST00000617529 3139 ntBASIC13.38□□□□□ -0.27
RNF4P78317 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.38□□□□□ -0.27
RNF4P78317 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
RNF4P78317 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RNF4P78317 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms