Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.23■□□□□ 0.03
LHX1P48742 AP000358.1-201ENST00000456260 156 ntBASIC15.23■□□□□ 0.03
LHX1P48742 KRT18P15-201ENST00000458108 1291 ntBASIC15.23■□□□□ 0.03
LHX1P48742 RNA5SP423-201ENST00000517127 109 ntBASIC15.23■□□□□ 0.03
LHX1P48742 IGLV3-15-201ENST00000518356 244 ntBASIC15.23■□□□□ 0.03
LHX1P48742 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.23■□□□□ 0.03
LHX1P48742 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
LHX1P48742 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 AC099063.4-201ENST00000641099 1602 ntBASIC15.23■□□□□ 0.03
LHX1P48742 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
LHX1P48742 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.23■□□□□ 0.03
LHX1P48742 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
LHX1P48742 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LHX1P48742 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
LHX1P48742 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 TUBB8P4-201ENST00000511806 1324 ntBASIC15.22■□□□□ 0.03
LHX1P48742 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
LHX1P48742 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.22■□□□□ 0.03
LHX1P48742 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LHX1P48742 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
LHX1P48742 AL583805.1-201ENST00000391389 531 ntBASIC15.22■□□□□ 0.03
LHX1P48742 AC103592.1-201ENST00000394513 664 ntBASIC15.22■□□□□ 0.03
LHX1P48742 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 AL592076.1-201ENST00000424448 303 ntBASIC15.22■□□□□ 0.03
LHX1P48742 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.22■□□□□ 0.03
LHX1P48742 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 MAX-218ENST00000557746 571 ntTSL 4 BASIC15.22■□□□□ 0.03
LHX1P48742 MIR3677-201ENST00000578964 60 ntBASIC15.22■□□□□ 0.03
LHX1P48742 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.22■□□□□ 0.03
LHX1P48742 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 AL353726.2-201ENST00000623259 884 ntBASIC15.22■□□□□ 0.03
LHX1P48742 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.22■□□□□ 0.03
LHX1P48742 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
LHX1P48742 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.22■□□□□ 0.03
LHX1P48742 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LHX1P48742 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC15.21■□□□□ 0.03
LHX1P48742 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
LHX1P48742 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LHX1P48742 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms