Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL034417.3-201ENST00000641100 1043 ntBASIC13.3□□□□□ -0.28
MSX1P28360 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 AL137784.3-201ENST00000623858 2288 ntBASIC13.3□□□□□ -0.28
MSX1P28360 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 AC064801.2-201ENST00000625052 1303 ntBASIC13.3□□□□□ -0.28
MSX1P28360 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 TMBIM7P-202ENST00000641474 1516 ntBASIC13.29□□□□□ -0.28
MSX1P28360 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
MSX1P28360 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
MSX1P28360 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 AC007688.1-201ENST00000475592 759 ntBASIC13.29□□□□□ -0.28
MSX1P28360 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 AC005740.2-201ENST00000511085 419 ntBASIC13.29□□□□□ -0.28
MSX1P28360 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 AL136295.7-201ENST00000619226 1200 ntBASIC13.29□□□□□ -0.28
MSX1P28360 AC091544.8-201ENST00000619490 361 ntBASIC13.29□□□□□ -0.28
MSX1P28360 MIR6727-201ENST00000620702 65 ntBASIC13.29□□□□□ -0.28
MSX1P28360 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
MSX1P28360 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
MSX1P28360 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
MSX1P28360 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
MSX1P28360 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.29□□□□□ -0.28
MSX1P28360 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.28□□□□□ -0.28
MSX1P28360 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
MSX1P28360 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.28□□□□□ -0.28
MSX1P28360 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.28□□□□□ -0.28
MSX1P28360 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.28□□□□□ -0.28
MSX1P28360 AL161932.2-201ENST00000435436 679 ntBASIC13.28□□□□□ -0.28
MSX1P28360 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.28□□□□□ -0.28
MSX1P28360 Z97180.1-201ENST00000445173 988 ntBASIC13.28□□□□□ -0.28
MSX1P28360 RN7SL11P-201ENST00000471305 293 ntBASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms