Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 MIR1227-201ENST00000408484 88 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 AC124068.2-201ENST00000569473 1109 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 AC084781.1-201ENST00000613737 656 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 AC105137.3-201ENST00000617588 984 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 AC025262.2-201ENST00000623975 1056 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 AC127024.7-201ENST00000625101 200 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 AP001184.1-201ENST00000637936 376 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 TNRC18P2-201ENST00000417666 2714 ntBASIC18.23■□□□□ 0.51
NPHP1O15259 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
NPHP1O15259 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
NPHP1O15259 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
NPHP1O15259 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC18.23■□□□□ 0.51
NPHP1O15259 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
NPHP1O15259 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.23■□□□□ 0.51
NPHP1O15259 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC18.22■□□□□ 0.51
NPHP1O15259 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC18.22■□□□□ 0.51
NPHP1O15259 KRT18P66-201ENST00000452970 1269 ntBASIC18.22■□□□□ 0.51
NPHP1O15259 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.22■□□□□ 0.51
NPHP1O15259 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.22■□□□□ 0.51
NPHP1O15259 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC18.22■□□□□ 0.51
NPHP1O15259 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
NPHP1O15259 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 AC009560.1-201ENST00000620208 434 ntBASIC18.22■□□□□ 0.51
NPHP1O15259 SSR4P1-203ENST00000599569 2260 ntBASIC18.22■□□□□ 0.51
NPHP1O15259 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
NPHP1O15259 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC18.22■□□□□ 0.51
NPHP1O15259 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
NPHP1O15259 CICP23-201ENST00000605013 2741 ntBASIC18.22■□□□□ 0.51
NPHP1O15259 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
NPHP1O15259 HLA-DMA-203ENST00000395305 777 ntBASIC18.21■□□□□ 0.51
NPHP1O15259 AC073869.2-201ENST00000417338 1026 ntBASIC18.21■□□□□ 0.51
NPHP1O15259 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC18.21■□□□□ 0.51
NPHP1O15259 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.21■□□□□ 0.51
NPHP1O15259 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC18.21■□□□□ 0.51
NPHP1O15259 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms