Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 AC104581.4-201ENST00000623126 3052 ntBASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
HIF3AQ9Y2N7 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SHC1P1-201ENST00000425230 1745 ntBASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC023794.5-201ENST00000564380 2157 ntBASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 PPY2P-201ENST00000582808 702 ntBASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 AHCYP2-201ENST00000430630 1300 ntBASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 KRT8P4-201ENST00000509735 1454 ntBASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HIF3AQ9Y2N7 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms