Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AC245100.3-201ENST00000441281 285 ntBASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AL355864.2-201ENST00000447420 863 ntBASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AC007389.4-201ENST00000454674 793 ntBASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 AMT-221ENST00000538581 2038 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC39Q9UFE4 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC39Q9UFE4 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 AL023775.1-201ENST00000454907 1746 ntBASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 RN7SL837P-201ENST00000463010 287 ntBASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 ENPP7P14-201ENST00000621765 1040 ntBASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 RPSAP52-203ENST00000622976 1023 ntBASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC39Q9UFE4 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms