Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
RNF4P78317 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 SPTLC1P5-201ENST00000450718 252 ntBASIC13.42□□□□□ -0.26
RNF4P78317 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
RNF4P78317 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.42□□□□□ -0.26
RNF4P78317 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.42□□□□□ -0.26
RNF4P78317 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.42□□□□□ -0.26
RNF4P78317 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 KRT8P21-201ENST00000430398 1491 ntBASIC13.42□□□□□ -0.26
RNF4P78317 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNF4P78317 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 AC005912.2-201ENST00000619492 2400 ntBASIC13.41□□□□□ -0.26
RNF4P78317 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RNF4P78317 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.41□□□□□ -0.26
RNF4P78317 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 AC104506.1-201ENST00000609247 429 ntBASIC13.41□□□□□ -0.26
RNF4P78317 AL591471.1-201ENST00000621855 229 ntBASIC13.41□□□□□ -0.26
RNF4P78317 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RNF4P78317 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RNF4P78317 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 LAP3P2-201ENST00000454686 1454 ntBASIC13.41□□□□□ -0.26
RNF4P78317 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNF4P78317 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.41□□□□□ -0.26
RNF4P78317 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RNF4P78317 BX640514.1-201ENST00000583223 1918 ntBASIC13.41□□□□□ -0.26
RNF4P78317 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
RNF4P78317 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
RNF4P78317 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC13.4□□□□□ -0.26
RNF4P78317 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC13.4□□□□□ -0.26
RNF4P78317 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
RNF4P78317 BCYRN1-201ENST00000418539 200 ntBASIC13.4□□□□□ -0.26
RNF4P78317 Z97180.1-201ENST00000445173 988 ntBASIC13.4□□□□□ -0.26
RNF4P78317 RN7SL11P-201ENST00000471305 293 ntBASIC13.4□□□□□ -0.26
RNF4P78317 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RNF4P78317 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.4□□□□□ -0.26
RNF4P78317 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms