Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
LMO4P61968 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC11.76□□□□□ -0.53
LMO4P61968 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 AC007952.4-201ENST00000573866 637 ntBASIC11.76□□□□□ -0.53
LMO4P61968 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
LMO4P61968 AC105137.3-201ENST00000617588 984 ntBASIC11.76□□□□□ -0.53
LMO4P61968 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 TNRC18P2-201ENST00000417666 2714 ntBASIC11.76□□□□□ -0.53
LMO4P61968 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 AC090502.4-201ENST00000551714 1386 ntBASIC11.76□□□□□ -0.53
LMO4P61968 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
LMO4P61968 AL022313.4-201ENST00000562756 2046 ntBASIC11.76□□□□□ -0.53
LMO4P61968 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LMO4P61968 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.76□□□□□ -0.53
LMO4P61968 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 IL9RP3-201ENST00000442856 1674 ntBASIC11.75□□□□□ -0.53
LMO4P61968 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.75□□□□□ -0.53
LMO4P61968 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC11.75□□□□□ -0.53
LMO4P61968 RN7SKP109-201ENST00000410592 316 ntBASIC11.75□□□□□ -0.53
LMO4P61968 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 CSNK1G2P1-201ENST00000442675 955 ntBASIC11.75□□□□□ -0.53
LMO4P61968 KRT18P15-201ENST00000458108 1291 ntBASIC11.75□□□□□ -0.53
LMO4P61968 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC11.75□□□□□ -0.53
LMO4P61968 CTBP2P4-201ENST00000513884 920 ntBASIC11.75□□□□□ -0.53
LMO4P61968 NAA40-205ENST00000539656 577 ntTSL 4 BASIC11.75□□□□□ -0.53
LMO4P61968 KLF17P1-201ENST00000547105 1126 ntBASIC11.75□□□□□ -0.53
LMO4P61968 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC11.75□□□□□ -0.53
LMO4P61968 CMC2-204ENST00000562713 573 ntTSL 3 BASIC11.75□□□□□ -0.53
LMO4P61968 CMC2-209ENST00000565108 399 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC11.75□□□□□ -0.53
LMO4P61968 RN7SL455P-201ENST00000580629 282 ntBASIC11.75□□□□□ -0.53
LMO4P61968 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC11.75□□□□□ -0.53
LMO4P61968 DBP-202ENST00000593500 712 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 AC140113.1-201ENST00000603467 169 ntBASIC11.75□□□□□ -0.53
LMO4P61968 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 SHMT1P1-201ENST00000419974 1312 ntBASIC11.75□□□□□ -0.53
LMO4P61968 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
LMO4P61968 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
LMO4P61968 AP001267.2-201ENST00000532619 2086 ntBASIC11.75□□□□□ -0.53
LMO4P61968 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC11.75□□□□□ -0.53
LMO4P61968 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC11.75□□□□□ -0.53
LMO4P61968 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
LMO4P61968 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC11.75□□□□□ -0.53
LMO4P61968 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LMO4P61968 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 AC046158.3-201ENST00000624947 2558 ntBASIC11.74□□□□□ -0.53
LMO4P61968 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 AMT-256ENST00000638063 1783 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
LMO4P61968 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC11.74□□□□□ -0.53
LMO4P61968 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LMO4P61968 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms