Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 VDAC1P1-201ENST00000439229 848 ntBASIC13.74□□□□□ -0.21
LIM2P55344 ST13P19-201ENST00000442505 1124 ntBASIC13.74□□□□□ -0.21
LIM2P55344 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 SCARNA21-201ENST00000517026 139 ntBASIC13.74□□□□□ -0.21
LIM2P55344 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 AC104506.1-201ENST00000609247 429 ntBASIC13.74□□□□□ -0.21
LIM2P55344 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 AP000346.4-201ENST00000614827 381 ntBASIC13.74□□□□□ -0.21
LIM2P55344 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.74□□□□□ -0.21
LIM2P55344 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
LIM2P55344 AC133540.1-201ENST00000620845 1019 ntBASIC13.74□□□□□ -0.21
LIM2P55344 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 AC004923.1-202ENST00000642106 209 ntBASIC13.74□□□□□ -0.21
LIM2P55344 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
LIM2P55344 HSPA8P5-201ENST00000456928 2069 ntBASIC13.74□□□□□ -0.21
LIM2P55344 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 AC079781.5-202ENST00000641784 3743 ntBASIC13.74□□□□□ -0.21
LIM2P55344 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LIM2P55344 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LIM2P55344 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.73□□□□□ -0.21
LIM2P55344 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.73□□□□□ -0.21
LIM2P55344 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
LIM2P55344 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.73□□□□□ -0.21
LIM2P55344 SERPINA13P-202ENST00000478994 924 ntBASIC13.73□□□□□ -0.21
LIM2P55344 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.73□□□□□ -0.21
LIM2P55344 HLA-J-204ENST00000495278 958 ntBASIC13.73□□□□□ -0.21
LIM2P55344 AC092658.1-201ENST00000505836 891 ntBASIC13.73□□□□□ -0.21
LIM2P55344 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.73□□□□□ -0.21
LIM2P55344 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 AC126915.1-201ENST00000522847 1038 ntBASIC13.73□□□□□ -0.21
LIM2P55344 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
LIM2P55344 RN7SL163P-201ENST00000583100 276 ntBASIC13.73□□□□□ -0.21
LIM2P55344 AL118558.3-201ENST00000607414 1079 ntBASIC13.73□□□□□ -0.21
LIM2P55344 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 KRT8P24-201ENST00000560290 1559 ntBASIC13.73□□□□□ -0.21
LIM2P55344 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
LIM2P55344 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.73□□□□□ -0.21
LIM2P55344 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LIM2P55344 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 FAM90A7P-201ENST00000382628 1395 ntBASIC13.72□□□□□ -0.21
LIM2P55344 FAM90A23P-201ENST00000400136 1395 ntBASIC13.72□□□□□ -0.21
LIM2P55344 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
LIM2P55344 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LIM2P55344 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.72□□□□□ -0.21
LIM2P55344 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms