Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.46■□□□□ 0.23
SMARCA1P28370 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 UPF3AP2-201ENST00000457924 1132 ntBASIC16.46■□□□□ 0.23
SMARCA1P28370 RN7SL67P-201ENST00000492147 296 ntBASIC16.46■□□□□ 0.23
SMARCA1P28370 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.46■□□□□ 0.23
SMARCA1P28370 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
SMARCA1P28370 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.46■□□□□ 0.23
SMARCA1P28370 AL021578.1-201ENST00000613646 709 ntBASIC16.46■□□□□ 0.23
SMARCA1P28370 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.46■□□□□ 0.23
SMARCA1P28370 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.46■□□□□ 0.23
SMARCA1P28370 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 KRT8P24-201ENST00000560290 1559 ntBASIC16.46■□□□□ 0.23
SMARCA1P28370 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.46■□□□□ 0.23
SMARCA1P28370 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SMARCA1P28370 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.22
SMARCA1P28370 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.46■□□□□ 0.22
SMARCA1P28370 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.46■□□□□ 0.22
SMARCA1P28370 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
SMARCA1P28370 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC026748.1-201ENST00000624349 3251 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SMARCA1P28370 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC015656.1-201ENST00000624209 3578 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.45■□□□□ 0.22
SMARCA1P28370 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 PPP1R2P4-201ENST00000424051 595 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.45■□□□□ 0.22
SMARCA1P28370 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 IMP3P2-201ENST00000489760 475 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.45■□□□□ 0.22
SMARCA1P28370 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.45■□□□□ 0.22
SMARCA1P28370 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.45■□□□□ 0.22
SMARCA1P28370 SIGLEC18P-201ENST00000602271 909 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SMARCA1P28370 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SMARCA1P28370 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SMARCA1P28370 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 TBC1D3J-201ENST00000620719 1426 ntBASIC16.45■□□□□ 0.22
SMARCA1P28370 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.45■□□□□ 0.22
SMARCA1P28370 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SMARCA1P28370 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms