Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
HOXD4P09016 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD4P09016 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD4P09016 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD4P09016 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD4P09016 AC253536.4-201ENST00000440539 267 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 HLA-J-204ENST00000495278 958 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 GCOM2-201ENST00000509133 1104 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD4P09016 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
HOXD4P09016 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.22□□□□□ -0.29
HOXD4P09016 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
HOXD4P09016 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXD4P09016 AC020910.5-201ENST00000623668 1865 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD4P09016 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 AC083964.2-201ENST00000623988 2396 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXD4P09016 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.22□□□□□ -0.29
HOXD4P09016 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.22□□□□□ -0.29
HOXD4P09016 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXD4P09016 E2F3P2-201ENST00000447755 1422 ntBASIC13.22□□□□□ -0.29
HOXD4P09016 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD4P09016 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 AP000845.1-201ENST00000581677 2131 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD4P09016 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
HOXD4P09016 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 AC009093.2-202ENST00000620513 2079 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD4P09016 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HOXD4P09016 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
HOXD4P09016 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD4P09016 AC024681.1-201ENST00000521917 487 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.21□□□□□ -0.29
HOXD4P09016 AC134698.3-201ENST00000523880 214 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 AC131206.1-201ENST00000538078 1211 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 MIR3907-201ENST00000579424 151 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 MIR4783-201ENST00000580343 82 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 AC008805.1-201ENST00000590892 364 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
HOXD4P09016 MIR6720-201ENST00000611664 98 ntBASIC13.21□□□□□ -0.29
HOXD4P09016 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD4P09016 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.21□□□□□ -0.29
HOXD4P09016 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
HOXD4P09016 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.21□□□□□ -0.3
HOXD4P09016 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
HOXD4P09016 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
HOXD4P09016 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
HOXD4P09016 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.21□□□□□ -0.3
HOXD4P09016 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.21□□□□□ -0.3
HOXD4P09016 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
HOXD4P09016 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.2□□□□□ -0.3
HOXD4P09016 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
HOXD4P09016 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms