Protein–RNA interactions for Protein: P01033

TIMP1, Metalloproteinase inhibitor 1, humanhuman

Predictions only

Length 207 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP1P01033 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 SNORA57-201ENST00000383870 149 ntBASIC15.32■□□□□ 0.04
TIMP1P01033 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
TIMP1P01033 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC15.32■□□□□ 0.04
TIMP1P01033 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC15.32■□□□□ 0.04
TIMP1P01033 AC006116.2-201ENST00000589958 988 ntBASIC15.32■□□□□ 0.04
TIMP1P01033 NEK4P3-201ENST00000604859 544 ntBASIC15.32■□□□□ 0.04
TIMP1P01033 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TIMP1P01033 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 SHMT1P1-201ENST00000419974 1312 ntBASIC15.32■□□□□ 0.04
TIMP1P01033 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.32■□□□□ 0.04
TIMP1P01033 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
TIMP1P01033 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TIMP1P01033 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 SNX15-201ENST00000352068 771 ntTSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 AC136604.1-202ENST00000425471 771 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC15.31■□□□□ 0.04
TIMP1P01033 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.31■□□□□ 0.04
TIMP1P01033 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 TBC1D3P6-201ENST00000505954 962 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 AC113347.2-201ENST00000512350 279 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC15.31■□□□□ 0.04
TIMP1P01033 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC15.31■□□□□ 0.04
TIMP1P01033 AL049840.2-201ENST00000602722 535 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 AL031673.1-201ENST00000611460 466 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 AC026336.4-201ENST00000624565 1050 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.31■□□□□ 0.04
TIMP1P01033 AC008894.3-201ENST00000624324 3103 ntBASIC15.31■□□□□ 0.04
TIMP1P01033 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.31■□□□□ 0.04
TIMP1P01033 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.31■□□□□ 0.04
TIMP1P01033 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TIMP1P01033 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
TIMP1P01033 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
TIMP1P01033 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.3■□□□□ 0.04
TIMP1P01033 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.3■□□□□ 0.04
TIMP1P01033 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
TIMP1P01033 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
TIMP1P01033 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.3■□□□□ 0.04
TIMP1P01033 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC15.3■□□□□ 0.04
TIMP1P01033 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 SARS-202ENST00000369923 1882 ntTSL 5 BASIC15.3■□□□□ 0.04
TIMP1P01033 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
TIMP1P01033 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms