Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 FAM90A23P-201ENST00000400136 1395 ntBASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A3BPQ9Y5P4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.21■□□□□ 0.18
COL4A3BPQ9Y5P4 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 MIR769-201ENST00000390225 118 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 SLC25A24P2-201ENST00000415059 510 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC125604.1-201ENST00000496255 707 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC005586.2-201ENST00000563946 837 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AL132994.2-201ENST00000603120 687 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC091544.8-201ENST00000619490 361 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC100757.4-201ENST00000626934 759 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AL805961.1-203ENST00000641078 1258 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC144522.1-201ENST00000625111 1658 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AC016397.2-201ENST00000624848 1985 ntBASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL4A3BPQ9Y5P4 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AC006122.1-201ENST00000493323 440 ntBASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AC009779.1-201ENST00000551138 283 ntBASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A3BPQ9Y5P4 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms