Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LRFN1Q9P244 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
LRFN1Q9P244 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TBC1D3J-201ENST00000620719 1426 ntBASIC13.32□□□□□ -0.28
LRFN1Q9P244 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 PARVG-202ENST00000415224 999 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 HINT2P1-201ENST00000419438 481 ntBASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 RN7SL258P-201ENST00000478664 300 ntBASIC13.32□□□□□ -0.28
LRFN1Q9P244 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC124068.2-201ENST00000569473 1109 ntBASIC13.32□□□□□ -0.28
LRFN1Q9P244 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
LRFN1Q9P244 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
LRFN1Q9P244 LINC01165-201ENST00000445190 1623 ntBASIC13.31□□□□□ -0.28
LRFN1Q9P244 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 AC015909.3-201ENST00000572855 1794 ntBASIC13.31□□□□□ -0.28
LRFN1Q9P244 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 OR2R1P-201ENST00000441404 914 ntBASIC13.31□□□□□ -0.28
LRFN1Q9P244 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 LINC01783-202ENST00000614408 828 ntBASIC13.31□□□□□ -0.28
LRFN1Q9P244 BX284668.2-205ENST00000619677 828 ntBASIC13.31□□□□□ -0.28
LRFN1Q9P244 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LRFN1Q9P244 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.31□□□□□ -0.28
LRFN1Q9P244 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms