Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 ZNF767P-206ENST00000513792 565 ntBASIC15.41■□□□□ 0.06
CISHQ9NSE2 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.41■□□□□ 0.06
CISHQ9NSE2 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CISHQ9NSE2 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AC090643.2-201ENST00000623442 2029 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 USP17L6P-201ENST00000382470 1197 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AC091804.1-201ENST00000486888 567 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 MIR6799-201ENST00000620297 69 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 CCT8L1P-201ENST00000465400 1674 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 AP002353.1-201ENST00000528257 1599 ntBASIC15.4■□□□□ 0.06
CISHQ9NSE2 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CISHQ9NSE2 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
CISHQ9NSE2 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AC092580.1-201ENST00000433998 658 ntBASIC15.39■□□□□ 0.05
CISHQ9NSE2 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 RCC2P8-201ENST00000502779 1035 ntBASIC15.39■□□□□ 0.05
CISHQ9NSE2 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AC140658.4-201ENST00000561990 352 ntBASIC15.39■□□□□ 0.05
CISHQ9NSE2 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.39■□□□□ 0.05
CISHQ9NSE2 AL157813.1-201ENST00000612996 587 ntBASIC15.39■□□□□ 0.05
CISHQ9NSE2 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms