Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 Z69890.1-201ENST00000382990 339 ntBASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HIST2H2BA-201ENST00000412169 381 ntBASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 AC027237.1-201ENST00000560942 655 ntBASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 HLA-DQB1-202ENST00000399079 1501 ntBASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SYNGAP1Q96PV0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.39■□□□□ 0.22
SYNGAP1Q96PV0 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
SYNGAP1Q96PV0 AC005089.1-201ENST00000619486 2241 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AP002353.1-201ENST00000528257 1599 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 HLA-DMA-203ENST00000395305 777 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AC012362.1-201ENST00000434906 739 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 LYPLA2P1-203ENST00000447689 696 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AC105137.3-201ENST00000617588 984 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 AL591471.1-201ENST00000621855 229 ntBASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SYNGAP1Q96PV0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 CYP51A1P3-201ENST00000400072 1428 ntBASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.38■□□□□ 0.21
SYNGAP1Q96PV0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms