Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AL009176.1-201ENST00000607876 650 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AP006248.1-201ENST00000610471 67 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AC092364.2-201ENST00000596710 2692 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 AC023090.2-201ENST00000625182 2110 ntBASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
SMC1BQ8NDV3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 HNRNPA1P21-201ENST00000424115 961 ntBASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 MIR4746-201ENST00000579802 71 ntBASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC132812.1-201ENST00000583145 892 ntBASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 ESR1-214ENST00000638569 132 ntTSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC019109.1-201ENST00000401725 1874 ntBASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SMC1BQ8NDV3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 HDGF-202ENST00000368206 960 ntTSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RPL18AP15-201ENST00000430258 517 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms