Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 AC025186.1-201ENST00000478174 870 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 PRMT1P1-201ENST00000604252 1009 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 AC245369.7-201ENST00000631386 350 ntBASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC88AQ3V6T2 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 AC073210.1-201ENST00000414799 232 ntBASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 AC104506.1-201ENST00000609247 429 ntBASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCDC88AQ3V6T2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 AC098657.1-201ENST00000416270 1135 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 FAM21EP-201ENST00000417804 985 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 AC108724.1-201ENST00000481669 352 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 MAX-218ENST00000557746 571 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 AL050341.2-201ENST00000567508 1541 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 ODCP-201ENST00000459650 1639 ntBASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC88AQ3V6T2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC113367.3-201ENST00000508316 1912 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 ASS1P2-201ENST00000439895 1223 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC113347.2-201ENST00000512350 279 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 RN7SL602P-201ENST00000578326 324 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 RN7SL718P-201ENST00000581254 303 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC004466.2-201ENST00000614749 516 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC005746.3-201ENST00000614751 393 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 AC010531.8-201ENST00000623341 685 ntBASIC17.27■□□□□ 0.35
CCDC88AQ3V6T2 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC88AQ3V6T2 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms