Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MRE11P49959 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC17.02■□□□□ 0.31
MRE11P49959 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
MRE11P49959 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
MRE11P49959 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MRE11P49959 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
MRE11P49959 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 AL360270.3-201ENST00000609118 1348 ntBASIC17.01■□□□□ 0.31
MRE11P49959 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 TP73-211ENST00000604074 4806 ntTSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 FAM220BP-201ENST00000377689 816 ntBASIC17.01■□□□□ 0.31
MRE11P49959 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 AC136604.1-202ENST00000425471 771 ntBASIC17.01■□□□□ 0.31
MRE11P49959 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.01■□□□□ 0.31
MRE11P49959 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.01■□□□□ 0.31
MRE11P49959 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.01■□□□□ 0.31
MRE11P49959 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
MRE11P49959 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 AP3S2-216ENST00000617003 1561 ntBASIC17.01■□□□□ 0.31
MRE11P49959 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC17.01■□□□□ 0.31
MRE11P49959 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MRE11P49959 AL445209.1-201ENST00000607269 3491 ntBASIC17.01■□□□□ 0.31
MRE11P49959 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MRE11P49959 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17■□□□□ 0.31
MRE11P49959 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17■□□□□ 0.31
MRE11P49959 MYADML-201ENST00000474610 2147 ntBASIC17■□□□□ 0.31
MRE11P49959 AC106818.1-201ENST00000623223 3242 ntBASIC17■□□□□ 0.31
MRE11P49959 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MRE11P49959 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17■□□□□ 0.31
MRE11P49959 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17■□□□□ 0.31
MRE11P49959 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC17■□□□□ 0.31
MRE11P49959 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 BRWD1P1-201ENST00000401091 371 ntBASIC17■□□□□ 0.31
MRE11P49959 AC087499.6-201ENST00000411576 835 ntBASIC17■□□□□ 0.31
MRE11P49959 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17■□□□□ 0.31
MRE11P49959 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MRE11P49959 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MRE11P49959 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17■□□□□ 0.31
MRE11P49959 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17■□□□□ 0.31
MRE11P49959 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17■□□□□ 0.31
MRE11P49959 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17■□□□□ 0.31
MRE11P49959 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17■□□□□ 0.31
MRE11P49959 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17■□□□□ 0.31
MRE11P49959 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 AL031719.1-201ENST00000623365 2587 ntBASIC17■□□□□ 0.31
MRE11P49959 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC17■□□□□ 0.31
MRE11P49959 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MRE11P49959 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms