Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 ORC6-206ENST00000568364 888 ntTSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 KSR1-207ENST00000578981 748 ntTSL 4 BASIC11.97□□□□□ -0.49
CDX1P47902 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 ATF5-205ENST00000600336 682 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AL512343.1-201ENST00000605837 169 ntBASIC11.97□□□□□ -0.49
CDX1P47902 AL008721.1-201ENST00000609964 604 ntBASIC11.97□□□□□ -0.49
CDX1P47902 MIR6752-201ENST00000618442 71 ntBASIC11.97□□□□□ -0.49
CDX1P47902 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC11.97□□□□□ -0.49
CDX1P47902 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 PCDHB18P-202ENST00000526308 3197 ntBASIC11.97□□□□□ -0.49
CDX1P47902 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC11.97□□□□□ -0.49
CDX1P47902 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CDX1P47902 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CDX1P47902 AOC4P-203ENST00000566825 2289 ntBASIC11.97□□□□□ -0.49
CDX1P47902 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CDX1P47902 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 NIN-202ENST00000324330 4364 ntTSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 AL645937.2-201ENST00000396808 931 ntBASIC11.96□□□□□ -0.49
CDX1P47902 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.96□□□□□ -0.49
CDX1P47902 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 RPL28-203ENST00000428193 573 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 RPL28-204ENST00000431533 590 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.96□□□□□ -0.49
CDX1P47902 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.96□□□□□ -0.49
CDX1P47902 AC004066.1-201ENST00000502488 802 ntBASIC11.96□□□□□ -0.49
CDX1P47902 AC022137.2-201ENST00000503482 481 ntBASIC11.96□□□□□ -0.49
CDX1P47902 KRT18P25-201ENST00000508931 1278 ntBASIC11.96□□□□□ -0.49
CDX1P47902 AP001889.1-201ENST00000525414 633 ntBASIC11.96□□□□□ -0.49
CDX1P47902 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 RPL28-207ENST00000558815 616 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 AP005482.1-201ENST00000563722 1273 ntBASIC11.96□□□□□ -0.49
CDX1P47902 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.96□□□□□ -0.49
CDX1P47902 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CDX1P47902 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.96□□□□□ -0.49
CDX1P47902 NPTN-IT1-201ENST00000628401 2283 ntBASIC11.96□□□□□ -0.49
CDX1P47902 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
CDX1P47902 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
CDX1P47902 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
CDX1P47902 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms